scplotlib is a python plotting library for the SingleCell object. It is built using Altair. It can generate various plots for data stored in a SingleCell object such as:

  1. Core plots - line plots, bar plots, scatter plots

  2. Visualizing high dimensional data - t-SNE plots, PCA plots

  3. Specialized plots - heatmaps, silhouette plots, outlier score plots


To install scplotlib, run the following command

pip install scplotlib


Check the project homepage for documentation.


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