scplotlib

scplotlib is a python plotting library for the SingleCell object. It is built using Altair. It can generate various plots for data stored in a SingleCell object such as:

  1. Core plots - line plots, bar plots, scatter plots

  2. Visualizing high dimensional data - t-SNE plots, PCA plots

  3. Specialized plots - heatmaps, silhouette plots, outlier score plots

Installation

To install scplotlib, run the following command

pip install scplotlib

Documentation

Check the project homepage for documentation.

Contact

Contact the author on vans.edw@gmail.com to give feedback/suggestions for further improvements and to report issues.